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Software gardening...
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Software gardening...
83 followers · 189 following

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Organizations

@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening

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d33bs/README.md

Hi, I'm Dave 👋

I'm a developer with a passion for software design, collaboration and innovation. Some of my interests include research data engineering, in-memory data flow, and scientific software.

I've been on Github for 13 years. During that time I've contributed to 109 repositories, opened 801 issues, performed 1094 code reviews, and have opened 1043 pull requests.

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  1. WayScience/ome-arrow WayScience/ome-arrow Public

    Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

    Python 6 1

  2. WayScience/iceberg-bioimage WayScience/iceberg-bioimage Public

    A format-agnostic framework for cataloging and querying bioimaging data (Parquet, OME-Zarr, OME-TIFF) with Apache Iceberg

    Python 1 1

  3. cytomining/CytoTable cytomining/CytoTable Public

    Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

    Python 19 6

  4. cytomining/CytoDataFrame cytomining/CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    Python 12 2

  5. cytomining/pycytominer cytomining/pycytominer Public

    Python package for image-based profiling bioinformatics

    Python 137 40

  6. software-gardening/almanack software-gardening/almanack Public

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    Jupyter Notebook 23 5