Beginner docs added#62
Open
Jay-sanjay wants to merge 2 commits intodevfrom
Open
Conversation
Member
Jay-sanjay
commented
Jul 26, 2024
- Beginner docs added for the functions added till now.
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## dev #62 +/- ##
=========================================
Coverage 100.00% 100.00%
=========================================
Files 2 2
Lines 19 46 +27
=========================================
+ Hits 19 46 +27 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
|
TheCedarPrince
requested changes
Sep 6, 2024
Member
TheCedarPrince
left a comment
There was a problem hiding this comment.
This looks good so far! I'll let you keep writing. Left one comment for now! 😃 Thanks Jay!!!
Comment on lines
+61
to
+84
| We will use this to generate database connection details that will inform `OMOPCDMCohortCreator` about the type of queries we will write (i.e. SQLite) and the name of the database's schema. | ||
| For this step, we will use `OMOPCDMCohortCreator`: | ||
|
|
||
| ```julia | ||
| import OMOPCDMCohortCreator as occ | ||
|
|
||
| occ.GenerateDatabaseDetails( | ||
| :sqlite, | ||
| "main" | ||
| ) | ||
| ``` | ||
|
|
||
| Finally, we will generate internal representations of each table found within Eunomia for OMOPCDMCohortCreator to use: | ||
|
|
||
| ```julia | ||
| occ.GenerateTables(conn) | ||
| ``` | ||
|
|
||
| As a check to make sure everything was correctly installed and works properly, the following block should work and return a list of all person ids in this data: | ||
|
|
||
| ```julia | ||
| occ.GetDatabasePersonIDs(conn) | ||
| ``` | ||
|
|
Member
There was a problem hiding this comment.
Remind me, I don't think we actually need any of this, correct?
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.